First photo shows the steering wheel position while the front wheels are straight. Second photo shows the pitman arm parallel with the frame. Steering shaft was installed with the set screw on the bottom of the input shaft. This seems way too far off for a pitman and center link change.
The new box was clocked, put the pitman arm on, installed the box, center link, tightened everything down.. maybe this is normal but it seems incorrect to me.
I don't know if this is your problem, but if your toe is out of whack, it can do that.