Lol, No. How many chevy trucks he's worked on is irrelevant if that's what he's telling you...The changes in bell housing bolt pattern itself isn't important...Here's what's important: Pump stator, input shaft, bell housing depth and torque converter all changed for the Gen3 small blocks - all of those changes require adaptors to use with a Generation 1 small block or big block. Generation 1/2 SBCs require a 298mm input shaft, stator designed to work with that shaft, shallower bell housing owing to the shorter converter (shorter if sitting on the bench top) relative to a TMBX converter that went behind the LS/Gen. 3 engines. The bell housing on that transmission is significantly deeper than the 700R4 that's in your truck now. The TMBX converter that you'll need for it is significantly taller/longer than the C40 converter that's installed in your truck now. The input shaft design is different (Gen 1s and 2s used a pilot at the end of the shaft while Gen3s do not - the splines go all the way to the top of the input shaft.
Maybe he's getting confused between 4L60E and 4L80E interchangeability over the years...The 4L80Es, regardless of model year, require no adaptation to bolt behind the gen 1, gen 2 or gen3 engines so if you wanted to use an earlier 4L80E behind a Gen3 small block LS or truck engine, no problem - just don't use the top bolt...The relationship between the pump, torque converter and rear block architecture never changed so no changes were needed to the input shaft, pump stator, torque converter dimensions or bell housing depth...The only difference between a 93-98 and a 99+ 4L80E case when it applies to fitment is the top bolt, which isn't necessary.
So what adaptor kit and/or methods will you be using to bolt that 4L60E to your generation 1 small block?
I know they exist but couldn't tell you which ones to buy as I know nothing about them...But I've built many 700R4s and LS Swaps that use a carb in classic cars/trucks and they run the 700 in behind the LS1, 2, 3, etc so they are using some adaptor to make it all work, fitment wise.
ETA - $100.00 is a great price for that unit - they for for at least $150 here on CL and wholesalers typically seek $250+ for later model units so you should have no problem selling it to break even or even at a profit...I'd take it off your hands in a heartbeat for $100.00. So please don't feel as though you're married to it...
I get into the PWM in another post once you confirm/align to the above as you continue your research...